Introduction | Scenarios | Setup | Scenario Definitions | Running Scenarios | Scenarios with Parameter Vectors | Parameter Input via Table | Parameter Uncertainty | Drawing Parameter Values | Correlated Draws | Vector Parameters | Running the Draws | Linking Draws to Outcomes | Migrating from random.params | Time-Varying Parameters and Control Settings (Advanced) | Parameter Updaters | Incorporating Updaters | Verbosity | Relative Parameter Changes | Time-Varying Control Settings

Introduction | Current Nodal Attributes | Core Attributes | Positional Indexing vs Unique IDs | Working With Attributes | Accessing Attributes | Modifying Attributes | Summary | Historical Nodal Attributes | Recording Attribute Histories | Accessing Attribute Histories | Epidemic Trackers | Working With Epidemic Trackers in Modules | Accessing Epidemic Trackers After a Simulation | Derived Statistics with mutate_epi() | Stratified Prevalence with epi.by | Custom Epidemic Trackers | Writing Tracker Functions | Using Custom Tracker Functions | Recording Arbitrary Objects (Advanced Debugging)

Introduction | Network Storage Modes | Accessing Network Objects | During Simulation (Inside Modules) | After Simulation | Transmission Matrix | Current Edgelists | Single Network | Multiple Networks | Discordant Edgelist | Positional Indexing and Unique IDs | Multi-Layer Networks | Specifying Layers | Per-Layer Controls and Parameters | Accessing Layers | Dependent Layers | Clique Layers | Building a Clique Layer | Clique Layers During Simulation | Arrivals and Departures | Moving Nodes Between Groups | Observed Network Layers | Building an Observed Layer | Simulation Time and the Observation Window | Observed Layers During Simulation | Cumulative Edgelist | Lifecycle | Enabling Cumulative Edgelists | Updating the Cumulative Edgelist | Accessing the Cumulative Edgelist | During Simulation: Specific Network | During Simulation: Multiple Networks | Contact Tracing | Cumulative Degree | Reachability Analysis | Forward Reachable Set | Backward Reachable Set | Converting External networkDynamic Objects | Deduplicating Across Sources | Performance Notes

What EpiModel Does | The Network Model Pipeline | Step 1: Network Estimation | Step 2: Network Diagnostics | Step 3: Epidemic Simulation | Step 4: Analyzing Results | Epidemic Trajectories | Summary Statistics | Data Extraction | Transmission Trees | Extending EpiModel | Learning Pathway | Beginner | Intermediate | Advanced | Package Documentation | Getting Help | Citation